DChip analyzer is a software program that helps in analyzing microdata as well as other upscale level of data analysis . Take a look at the whole tutorial here. associated “Short tutorial” () and “Lab” with my editorial comments / data/bioinfo/affymetrix/00 Affymetrix Info/DChip Files. The entire. This manual is written in a tutorial style. It is best to explore the functionalities of dChip by following the steps described here sequentially. Paragraphs labeled as .

Author: Maura Bragal
Country: Canada
Language: English (Spanish)
Genre: Education
Published (Last): 8 July 2014
Pages: 297
PDF File Size: 4.96 Mb
ePub File Size: 9.88 Mb
ISBN: 486-1-65098-890-5
Downloads: 20824
Price: Free* [*Free Regsitration Required]
Uploader: Netilar

I am facing a problem to obtain the segmentation files for probes in SNP 6.

My question is that is there any other tools that can process the raw CEL files, e. I personally haven’t worked with raw SNP 6.

How ttuorial use affy SNP6. Thanks, DNAcopy is a commonly accept CBS tool, while it requires a signal intensity log2ratio for each probe as the input.


dChip – GemiNi Analysis

It seems that the tools you mentioned did not take the reference CN into consideration. Please log in to add an answer.

I Freshly got the. When I downloaded the package of “affymetrix power tool”,I use it to process.

Hi all, Just a discussion, For microArray data, tuotrial are always two ways to obtain the express Hi all, as we know, TCGA offered us a good resource for genomic analysis. Here I have a question I am using dChip for analyzing Affy Cel files. I want to find differentially expressed genes in m Now I have the.


I just genotyped an SNP array from. CEL file using the R package “crlmm”, now I have a variable c I have 10 gene expression data sets i.

CEL files and phenotype I need to calculate tutotial expression values called average difference and confidence values. I know variant of this question are asked a lot, but I can’t find my specific question. Use of this site constitutes acceptance of our User Agreement and Privacy Policy.


Powered by Biostar version 2.